R1FKR1_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1FKR1_EMIHU

Elongation of fatty acids protein. (276 aa)

Predicted Functional Partners:

R1BQ42_EMIHU

0.546

R1DL79_EMIHU

0.490

ELO_b

0.424

R1C9G1_EMIHU

0.424

R1DQM6_EMIHU

0.424

ELO_a

0.424

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELO_a	ELO_b	R1DTJ4	R1C7Z9	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.902
ELO_a	R1C9G1_EMIHU	R1DTJ4	R1C9G1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.902
ELO_a	R1DQM6_EMIHU	R1DTJ4	R1DQM6	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.909
ELO_a	R1FKR1_EMIHU	R1DTJ4	R1FKR1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424
ELO_b	ELO_a	R1C7Z9	R1DTJ4	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.902
ELO_b	R1C9G1_EMIHU	R1C7Z9	R1C9G1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.900
ELO_b	R1DQM6_EMIHU	R1C7Z9	R1DQM6	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.910
ELO_b	R1FKR1_EMIHU	R1C7Z9	R1FKR1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424
R1BQ42_EMIHU	R1FKR1_EMIHU	R1BQ42	R1FKR1	2-Hacid_dh_C domain-containing protein.	Elongation of fatty acids protein.	0.546
R1C9G1_EMIHU	ELO_a	R1C9G1	R1DTJ4	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.902
R1C9G1_EMIHU	ELO_b	R1C9G1	R1C7Z9	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.900
R1C9G1_EMIHU	R1DQM6_EMIHU	R1C9G1	R1DQM6	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.910
R1C9G1_EMIHU	R1FKR1_EMIHU	R1C9G1	R1FKR1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424
R1DL79_EMIHU	R1FKR1_EMIHU	R1DL79	R1FKR1	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Elongation of fatty acids protein.	0.490
R1DQM6_EMIHU	ELO_a	R1DQM6	R1DTJ4	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.909
R1DQM6_EMIHU	ELO_b	R1DQM6	R1C7Z9	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.910
R1DQM6_EMIHU	R1C9G1_EMIHU	R1DQM6	R1C9G1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.910
R1DQM6_EMIHU	R1FKR1_EMIHU	R1DQM6	R1FKR1	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424
R1FKR1_EMIHU	ELO_a	R1FKR1	R1DTJ4	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424
R1FKR1_EMIHU	ELO_b	R1FKR1	R1C7Z9	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.424