R1FRM2_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1FRM2_EMIHU

Glyco_hydro_2_C domain-containing protein. (639 aa)

Predicted Functional Partners:

R1E1T6_EMIHU

0.530

R1E2J1_EMIHU

0.523

R1G036_EMIHU

0.523

R1D5J0_EMIHU

0.493

R1ERP9_EMIHU

0.493

R1BGC3_EMIHU

0.430

R1DE41_EMIHU

0.430

R1G151_EMIHU

0.430

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BGC3_EMIHU	R1FRM2_EMIHU	R1BGC3	R1FRM2	Uncharacterized protein.	Glyco_hydro_2_C domain-containing protein.	0.430
R1D5J0_EMIHU	R1FRM2_EMIHU	R1D5J0	R1FRM2	Translocation protein SEC63.	Glyco_hydro_2_C domain-containing protein.	0.493
R1DE41_EMIHU	R1FRM2_EMIHU	R1DE41	R1FRM2	NFACT-R_1 domain-containing protein.	Glyco_hydro_2_C domain-containing protein.	0.430
R1E1T6_EMIHU	R1E2J1_EMIHU	R1E1T6	R1E2J1	Glyco_hydro_2_N domain-containing protein.	Uncharacterized protein.	0.564
R1E1T6_EMIHU	R1FRM2_EMIHU	R1E1T6	R1FRM2	Glyco_hydro_2_N domain-containing protein.	Glyco_hydro_2_C domain-containing protein.	0.530
R1E1T6_EMIHU	R1G036_EMIHU	R1E1T6	R1G036	Glyco_hydro_2_N domain-containing protein.	Uncharacterized protein.	0.868
R1E2J1_EMIHU	R1E1T6_EMIHU	R1E2J1	R1E1T6	Uncharacterized protein.	Glyco_hydro_2_N domain-containing protein.	0.564
R1E2J1_EMIHU	R1FRM2_EMIHU	R1E2J1	R1FRM2	Uncharacterized protein.	Glyco_hydro_2_C domain-containing protein.	0.523
R1ERP9_EMIHU	R1FRM2_EMIHU	R1ERP9	R1FRM2	J domain-containing protein.	Glyco_hydro_2_C domain-containing protein.	0.493
R1FRM2_EMIHU	R1BGC3_EMIHU	R1FRM2	R1BGC3	Glyco_hydro_2_C domain-containing protein.	Uncharacterized protein.	0.430
R1FRM2_EMIHU	R1D5J0_EMIHU	R1FRM2	R1D5J0	Glyco_hydro_2_C domain-containing protein.	Translocation protein SEC63.	0.493
R1FRM2_EMIHU	R1DE41_EMIHU	R1FRM2	R1DE41	Glyco_hydro_2_C domain-containing protein.	NFACT-R_1 domain-containing protein.	0.430
R1FRM2_EMIHU	R1E1T6_EMIHU	R1FRM2	R1E1T6	Glyco_hydro_2_C domain-containing protein.	Glyco_hydro_2_N domain-containing protein.	0.530
R1FRM2_EMIHU	R1E2J1_EMIHU	R1FRM2	R1E2J1	Glyco_hydro_2_C domain-containing protein.	Uncharacterized protein.	0.523
R1FRM2_EMIHU	R1ERP9_EMIHU	R1FRM2	R1ERP9	Glyco_hydro_2_C domain-containing protein.	J domain-containing protein.	0.493
R1FRM2_EMIHU	R1G036_EMIHU	R1FRM2	R1G036	Glyco_hydro_2_C domain-containing protein.	Uncharacterized protein.	0.523
R1FRM2_EMIHU	R1G151_EMIHU	R1FRM2	R1G151	Glyco_hydro_2_C domain-containing protein.	NFACT-R_1 domain-containing protein.	0.430
R1G036_EMIHU	R1E1T6_EMIHU	R1G036	R1E1T6	Uncharacterized protein.	Glyco_hydro_2_N domain-containing protein.	0.868
R1G036_EMIHU	R1FRM2_EMIHU	R1G036	R1FRM2	Uncharacterized protein.	Glyco_hydro_2_C domain-containing protein.	0.523
R1G151_EMIHU	R1FRM2_EMIHU	R1G151	R1FRM2	NFACT-R_1 domain-containing protein.	Glyco_hydro_2_C domain-containing protein.	0.430