R1G050_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1G050_EMIHU

Fe2OG dioxygenase domain-containing protein. (353 aa)

Predicted Functional Partners:

R1DDJ8_EMIHU

0.651

R1EDA2_EMIHU

0.651

R1FSM8_EMIHU

0.651

R1C1R6_EMIHU

0.650

R1D8C3_EMIHU

0.650

R1DDJ3_EMIHU

0.650

R1EC02_EMIHU

0.650

R1EK45_EMIHU

0.650

R1FDI6_EMIHU

0.650

R1FQS2_EMIHU

0.650

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1C1R6_EMIHU	R1DDJ3_EMIHU	R1C1R6	R1DDJ3	Proline iminopeptidase.	F420_oxidored domain-containing protein.	0.900
R1C1R6_EMIHU	R1EC02_EMIHU	R1C1R6	R1EC02	Proline iminopeptidase.	Pyrroline-5-carboxylate reductase.	0.900
R1C1R6_EMIHU	R1FQS2_EMIHU	R1C1R6	R1FQS2	Proline iminopeptidase.	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	0.900
R1C1R6_EMIHU	R1FSM8_EMIHU	R1C1R6	R1FSM8	Proline iminopeptidase.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.900
R1C1R6_EMIHU	R1G050_EMIHU	R1C1R6	R1G050	Proline iminopeptidase.	Fe2OG dioxygenase domain-containing protein.	0.650
R1D8C3_EMIHU	R1DDJ3_EMIHU	R1D8C3	R1DDJ3	AB hydrolase-1 domain-containing protein.	F420_oxidored domain-containing protein.	0.900
R1D8C3_EMIHU	R1EC02_EMIHU	R1D8C3	R1EC02	AB hydrolase-1 domain-containing protein.	Pyrroline-5-carboxylate reductase.	0.900
R1D8C3_EMIHU	R1FQS2_EMIHU	R1D8C3	R1FQS2	AB hydrolase-1 domain-containing protein.	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	0.900
R1D8C3_EMIHU	R1FSM8_EMIHU	R1D8C3	R1FSM8	AB hydrolase-1 domain-containing protein.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.900
R1D8C3_EMIHU	R1G050_EMIHU	R1D8C3	R1G050	AB hydrolase-1 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.650
R1DDJ3_EMIHU	R1C1R6_EMIHU	R1DDJ3	R1C1R6	F420_oxidored domain-containing protein.	Proline iminopeptidase.	0.900
R1DDJ3_EMIHU	R1D8C3_EMIHU	R1DDJ3	R1D8C3	F420_oxidored domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.900
R1DDJ3_EMIHU	R1DDJ8_EMIHU	R1DDJ3	R1DDJ8	F420_oxidored domain-containing protein.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.930
R1DDJ3_EMIHU	R1EC02_EMIHU	R1DDJ3	R1EC02	F420_oxidored domain-containing protein.	Pyrroline-5-carboxylate reductase.	0.900
R1DDJ3_EMIHU	R1EDA2_EMIHU	R1DDJ3	R1EDA2	F420_oxidored domain-containing protein.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.930
R1DDJ3_EMIHU	R1EK45_EMIHU	R1DDJ3	R1EK45	F420_oxidored domain-containing protein.	Proline iminopeptidase.	0.900
R1DDJ3_EMIHU	R1FDI6_EMIHU	R1DDJ3	R1FDI6	F420_oxidored domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.900
R1DDJ3_EMIHU	R1FQS2_EMIHU	R1DDJ3	R1FQS2	F420_oxidored domain-containing protein.	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	0.900
R1DDJ3_EMIHU	R1FSM8_EMIHU	R1DDJ3	R1FSM8	F420_oxidored domain-containing protein.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.930
R1DDJ3_EMIHU	R1G050_EMIHU	R1DDJ3	R1G050	F420_oxidored domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.650