STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_0173KEGG: plt:Plut_0330 uridine kinase-like. (219 aa)    
Predicted Functional Partners:
Clim_0284
KEGG: pvi:Cvib_0691 hypothetical protein.
    
 0.836
Clim_1689
KEGG: cph:Cpha266_1870 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.820
Clim_1297
KEGG: cch:Cag_1146 hypothetical protein.
  
 0.687
Clim_0967
TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cph:Cpha266_1089 D-3-phosphoglycerate dehydrogenase.
   
  0.646
Clim_1889
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nis:NIS_0664 D-3-phosphoglycerate dehydrogenase.
   
  0.646
Clim_1897
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dvl:Dvul_2644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
  0.646
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
   
 0.640
Clim_1476
Miro domain protein; PFAM: leucine-rich repeat protein; Miro domain protein; KEGG: ter:Tery_3798 small GTP-binding protein.
  
 
 0.560
Clim_0174
Putative PAS/PAC sensor protein; KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.551
Clim_0160
KEGG: cph:Cpha266_2498 CMP/dCMP deaminase, zinc-binding.
   
 
 0.545
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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