STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_0327PFAM: Electron transfer flavoprotein alpha subunit; KEGG: pvi:Cvib_1535 electron transfer flavoprotein, alpha subunit. (323 aa)    
Predicted Functional Partners:
Clim_0326
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pvi:Cvib_1536 electron transfer flavoprotein beta-subunit.
 0.999
Clim_2059
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
 
 0.999
Clim_0325
PFAM: Methyltransferase type 11; KEGG: pla:Plav_2493 methyltransferase type 11.
     
 0.776
Clim_1605
FAD linked oxidase domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: cph:Cpha266_1511 FAD linked oxidase domain protein.
  
 
 0.754
Clim_0530
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: cph:Cpha266_0816 FAD linked oxidase domain protein.
 
 
 0.692
Clim_1231
PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2.
  
  
 0.691
Clim_0328
PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cph:Cpha266_0395 protein of unknown function DUF151.
       0.641
Clim_0344
PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_0413 putative NADPH-dependent glutamate synthase small subunit.
  
 
 0.581
Clim_1378
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
   
  
 0.581
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  
 0.559
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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