STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_0388PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (458 aa)    
Predicted Functional Partners:
Clim_1231
PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2.
  
 0.957
Clim_2344
KEGG: cph:Cpha266_0177 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.944
Clim_2442
KEGG: plt:Plut_2081 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.935
Clim_2343
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: cph:Cpha266_0176 succinate dehydrogenase subunit B.
  
 
 0.928
Clim_2441
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0100 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
   
 
 0.917
Clim_1025
Succinate CoA transferase; KEGG: azo:azo3307 probable coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.
  
 
 0.910
Clim_2342
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cph:Cpha266_0175 succinate dehydrogenase subunit C.
   
 
  0.902
Clim_2443
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cph:Cpha266_0102 succinate dehydrogenase subunit C.
     
  0.900
Clim_2042
KEGG: cph:Cpha266_2083 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 0.894
Clim_0808
PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: plt:Plut_1267 oxaloacetate decarboxylase, alpha subunit.
    
 0.875
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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