STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_0700TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cch:Cag_1951 DsrF protein. (123 aa)    
Predicted Functional Partners:
Clim_0699
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cch:Cag_1952 DsrE protein.
 
 0.999
Clim_0701
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cte:CT0857 DsrH protein.
 
 0.999
Clim_0693
TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: plt:Plut_0035 sulfite reductase, dissimilatory-type, gamma subunit.
 
  
 0.886
Clim_0695
KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
     0.821
Clim_0694
KEGG: cph:Cpha266_0128 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
     0.779
Clim_0704
DsrK protein; KEGG: cph:Cpha266_0137 DsrK protein.
 
   
 0.757
Clim_0703
PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit.
 
     0.730
Clim_0705
KEGG: cph:Cpha266_0138 hypothetical protein.
 
     0.711
Clim_0706
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.666
Clim_0696
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0130 putative glutamate synthase (NADPH) small subunit.
 
   
 0.641
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.