close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_1007PFAM: protein of unknown function DUF105; KEGG: cte:CT0414 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Clim_1008
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0415 carbon-nitrogen hydrolase family protein.
 
     0.858
Clim_1013
KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.843
Clim_1010
Anaerobic cobalt chelatase; PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: cte:CT0389 cobalt chelatase CbiK, putative.
 
     0.827
Clim_1011
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0388 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
 
     0.825
Clim_1005
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0412 iron(III) ABC transporter, ATP-binding protein, putative.
 
     0.823
Clim_1006
KEGG: cte:CT0413 putative iron complex transport system substrate-binding protein.
 
     0.821
Clim_1012
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase.
     
 0.821
Clim_1014
KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein.
     
 0.820
Clim_1004
PFAM: transport system permease protein; KEGG: cte:CT0411 iron(III) ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.819
Clim_1003
PFAM: periplasmic binding protein; KEGG: cte:CT0410 iron(III) ABC transporter, periplasmic iron-binding protein.
 
     0.815
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.