STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_1426PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cph:Cpha266_1004 iron-containing alcohol dehydrogenase. (396 aa)    
Predicted Functional Partners:
Clim_1427
PFAM: protein of unknown function DUF134; KEGG: cph:Cpha266_1003 protein of unknown function DUF134; Belongs to the UPF0251 family.
       0.773
Clim_1428
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cph:Cpha266_1002 C4-dicarboxylate transporter/malic acid transport protein.
       0.711
Clim_1113
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1144 alcohol dehydrogenase, zinc-containing.
  
 
 0.655
Clim_0618
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.624
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.561
Clim_1429
PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein.
       0.537
Clim_1058
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein.
  
  
 0.450
Clim_2440
KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain.
  
    0.415
Clim_0481
KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain.
  
    0.412
Clim_0460
KEGG: cph:Cpha266_0523 hypothetical protein.
  
    0.410
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.