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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_1663PFAM: Hemolysin-type calcium-binding region; KEGG: ana:alr7304 similar to hlyA. (824 aa)    
Predicted Functional Partners:
Clim_2275
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: prw:PsycPRwf_0760 ABC transporter related.
 
  
 0.734
Clim_1659
KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; TIGRFAM: type I secretion system ATPase; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
 
  
 0.708
Clim_2276
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: prw:PsycPRwf_0761 type I secretion membrane fusion protein, HlyD family.
 
  
 0.700
Clim_2271
PFAM: Hemolysin-type calcium-binding region; KEGG: bpl:BURPS1106A_2063 type I secretion target repeat protein.
 
 
 0.685
Clim_1665
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: lpf:lpl0681 structural toxin protein RtxA.
 
 
0.652
Clim_1873
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2318 glycosyl transferase, group 1.
  
     0.599
Clim_2273
FG-GAP repeat protein; PFAM: Hemolysin-type calcium-binding region; lipase class 3; FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: gvi:glr1840 hypothetical protein.
  
     0.597
Clim_1658
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein.
 
  
 0.559
Clim_1664
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family.
 
  
 0.549
Clim_0676
PFAM: TonB-dependent receptor; KEGG: cph:Cpha266_0440 TonB-dependent receptor, putative.
    
 
 0.511
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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