node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
def | fmt | Clim_1679 | Clim_1678 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.954 |
def | rplI | Clim_1679 | Clim_0150 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.793 |
def | rplT | Clim_1679 | Clim_0153 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.828 |
def | rpmA | Clim_1679 | Clim_1712 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: ribosomal protein L27; KEGG: plt:Plut_1509 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.782 |
def | rpmB | Clim_1679 | Clim_0629 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: ribosomal protein L28; KEGG: cte:CT1611 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.790 |
def | rpsJ | Clim_1679 | Clim_2230 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.782 |
def | rpsO | Clim_1679 | Clim_0304 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.775 |
def | rpsT | Clim_1679 | Clim_0320 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.830 |
def | rpsU | Clim_1679 | Clim_2124 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: ribosomal protein S21; KEGG: cph:Cpha266_2278 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.798 |
def | tig | Clim_1679 | Clim_2137 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.813 |
fmt | def | Clim_1678 | Clim_1679 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.954 |
fmt | rplI | Clim_1678 | Clim_0150 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.413 |
rplI | def | Clim_0150 | Clim_1679 | Ribosomal protein L9; Binds to the 23S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.793 |
rplI | fmt | Clim_0150 | Clim_1678 | Ribosomal protein L9; Binds to the 23S rRNA. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.413 |
rplI | rplT | Clim_0150 | Clim_0153 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.987 |
rplI | rpmA | Clim_0150 | Clim_1712 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein L27; KEGG: plt:Plut_1509 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.985 |
rplI | rpmB | Clim_0150 | Clim_0629 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein L28; KEGG: cte:CT1611 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.962 |
rplI | rpsJ | Clim_0150 | Clim_2230 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.978 |
rplI | rpsO | Clim_0150 | Clim_0304 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.956 |
rplI | rpsT | Clim_0150 | Clim_0320 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.894 |