Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Clim_1908KEGG: ppd:Ppro_0062 hypothetical protein. (413 aa)    
Predicted Functional Partners:
Clim_1909
KEGG: hma:rrnAC2982 hypothetical protein.
       0.773
Clim_1910
KEGG: sfu:Sfum_2196 hypothetical protein.
       0.737
Clim_1911
Hypothetical protein; KEGG: sfu:Sfum_2199 coenzyme PQQ synthesis D.
       0.737
Clim_1912
Hypothetical protein.
       0.507
Clim_1913
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_2197 radical SAM domain protein.
 
     0.468
Clim_1906
Capsular exopolysaccharide family; KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
     0.427
Clim_1915
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amr:AM1_1912 ABC transporter, ATP-binding/permease protein.
 
     0.408
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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