Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Clim_1981TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_1672 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Clim_1980
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein.
     
 0.789
Clim_1979
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 TPR repeat-containing protein.
       0.773
Clim_0494
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_0538 hypothetical protein.
  
     0.772
Clim_2175
PFAM: aminotransferase class V; KEGG: pvi:Cvib_0301 aminotransferase, class V.
  
  
 0.741
Clim_2174
PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cph:Cpha266_2362 nitrogen-fixing NifU domain protein.
  
  
 0.714
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.670
Clim_1982
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12.
       0.454
Clim_1983
KEGG: cph:Cpha266_0507 cytochrome c, putative.
 
  
 0.445
Clim_1807
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: cch:Cag_1357 cytochrome-c oxidase FixO chain.
  
  
 0.435
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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