Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Clim_2005PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cph:Cpha266_0486 cobalamin (vitamin B12) biosynthesis CbiM protein. (343 aa)    
Predicted Functional Partners:
Clim_2006
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cph:Cpha266_0485 cobalt transport protein.
 
 
 0.994
Clim_2007
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0484 ABC transporter related.
 
 
 0.988
Clim_1062
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cte:CT0392 cobalt transport protein.
 
 
 0.940
Clim_1063
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 0.914
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
  
 
0.913
cbiN
Cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
 
 
 0.905
Clim_1014
KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein.
  
  
 0.742
Clim_1012
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase.
  
  
 0.598
Clim_2004
KEGG: cph:Cpha266_0487 hypothetical protein.
 
     0.575
Clim_1013
KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.533
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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