Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Clim_2011TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.887
Clim_0837
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein.
 
  0.782
Clim_1535
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1669 protein of unknown function DUF214.
 
   0.782
Clim_1534
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214.
 
   0.774
Clim_2010
PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; Belongs to the ferrochelatase family.
       0.773
Clim_2350
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein.
 
  0.759
Clim_1531
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein.
 
  0.734
Clim_1946
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein.
 
  0.730
Clim_1664
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family.
  
 0.712
Clim_1432
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_1563 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.695
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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