STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clim_2346PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein; Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family. (226 aa)    
Predicted Functional Partners:
Clim_2347
KEGG: cph:Cpha266_0180 hypothetical protein.
       0.777
Clim_2349
KEGG: plt:Plut_2000 hypothetical protein.
     
 0.777
Clim_2348
PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.773
Clim_2351
PFAM: protein of unknown function DUF156; KEGG: cph:Cpha266_0184 hypothetical protein.
     
 0.667
Clim_2350
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein.
       0.651
Clim_0011
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit.
   
 0.542
Clim_1369
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_0131 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.542
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
 0.468
Clim_2345
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS.
       0.455
Clim_2352
KEGG: plt:Plut_2003 hypothetical protein.
       0.431
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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