Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Clim_2467PFAM: restriction modification system DNA specificity domain; KEGG: tcx:Tcr_0333 restriction modification system DNA specificity domain. (438 aa)    
Predicted Functional Partners:
Clim_2469
PFAM: N-6 DNA methylase; KEGG: cph:Cpha266_1712 N-6 DNA methylase.
 
 
 0.987
Clim_0128
N-6 DNA methylase; PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: cph:Cpha266_0895 N-6 DNA methylase.
 
 
 0.926
Clim_2461
KEGG: cph:Cpha266_1705 protein of unknown function DUF559; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; protein of unknown function DUF559; SMART: DEAD-like helicases.
 
  
 0.900
Clim_2468
KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D.
       0.785
Clim_2268
KEGG: cph:Cpha266_1501 hypothetical protein.
  
 
 0.776
Clim_0129
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_0896 type III restriction enzyme, res subunit.
 
 
 0.757
Clim_2466
KEGG: pst:PSPTO_4326 hypothetical protein.
   
   0.712
Clim_2465
PFAM: protein of unknown function DUF87; KEGG: pst:PSPTO_4332 hypothetical protein.
       0.701
Clim_0122
KEGG: ava:Ava_1156 type I site-specific deoxyribonuclease HsdR.
  
  
 0.576
Clim_2470
Hypothetical protein.
       0.519
Your Current Organism:
Chlorobium limicola
NCBI taxonomy Id: 290315
Other names: C. limicola DSM 245, Chlorobium limicola 6330, Chlorobium limicola DSM 245, Chlorobium limicola DSMZ 245(T), Chlorobium limicola str. DSM 245, Chlorobium limicola strain DSM 245
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