STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0042KEGG: plt:Plut_0039 hypothetical protein. (120 aa)    
Predicted Functional Partners:
Cvib_0041
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: plt:Plut_0038 iron-sulfur cluster-binding protein, GltD family.
     
 0.797
Cvib_0043
PFAM: DsrE family protein; KEGG: plt:Plut_0040 DsrE protein.
       0.625
Cvib_0044
PFAM: DsrE family protein; KEGG: plt:Plut_0041 DsrF protein.
       0.625
Cvib_0040
KEGG: plt:Plut_0037 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
       0.619
Cvib_0045
PFAM: DsrH family protein; KEGG: plt:Plut_0042 DsrH protein.
       0.520
Cvib_0046
KEGG: plt:Plut_0043 hypothetical protein.
     
 0.504
Cvib_0039
KEGG: plt:Plut_0036 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
       0.500
Cvib_0047
Putative sulfite reductase-associated electron transfer protein DsrM; PFAM: Nitrate reductase, gamma subunit; KEGG: plt:Plut_0044 DsrM protein.
     
 0.483
Cvib_0049
Putative sulfite reductase-associated electron transfer protein DsrJ; KEGG: plt:Plut_0046 hypothetical protein.
       0.479
Cvib_0050
Putative sulfite reductase-associated electron transfer protein DsrO; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: plt:Plut_0047 polysulfide reductase, subunit B, putative.
       0.479
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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