STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0127KEGG: plt:Plut_0532 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Cvib_0128
SOS response UmuD protein, Serine peptidase, MEROPS family S24; PFAM: peptidase S24, S26A and S26B; KEGG: plt:Plut_1201 SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like.
       0.773
Cvib_0129
DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: plt:Plut_1200 DNA-directed DNA polymerase.
       0.752
Cvib_0126
KEGG: plt:Plut_0353 hypothetical protein.
       0.490
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.