STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0466KEGG: plt:Plut_0414 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Cvib_0465
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_0413 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.778
Cvib_0464
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
       0.776
Cvib_0467
KEGG: plt:Plut_0415 hypothetical protein.
       0.773
Cvib_0289
KEGG: plt:Plut_0223 hypothetical protein.
  
     0.590
Cvib_0463
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: plt:Plut_0411 hypothetical protein.
       0.558
Cvib_1550
PFAM: protein of unknown function DUF1239; KEGG: plt:Plut_1768 hypothetical protein.
  
     0.554
Cvib_0239
KEGG: plt:Plut_0173 hypothetical protein.
  
     0.549
Cvib_0468
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.539
Cvib_1109
PFAM: permease YjgP/YjgQ family protein; KEGG: plt:Plut_0723 hypothetical protein.
  
     0.514
Cvib_0928
KEGG: cte:CT1154 hypothetical protein.
  
     0.495
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.