STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_0668KEGG: bja:bll1927 hypothetical protein. (220 aa)    
Predicted Functional Partners:
Cvib_0667
KEGG: xom:XOO_2998 hypothetical protein.
 
   
 0.948
Cvib_0669
KEGG: mxa:MXAN_2105 putative transposase.
       0.664
Cvib_0665
PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0908 hypothetical protein.
 
     0.545
Cvib_0666
Hypothetical protein.
       0.531
Cvib_1663
KEGG: cbu:CBU_0770 hypothetical protein.
  
     0.417
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.