STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pal-2PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0615 outer membrane protein and related peptidoglycan-associated (LipO)proteins-like; Belongs to the Pal lipoprotein family. (152 aa)    
Predicted Functional Partners:
Cvib_1164
WD-40 repeat-containing protein; PFAM: WD40 domain protein beta Propeller; KEGG: plt:Plut_0614 TolB protein, putative.
 
 
 0.957
Cvib_1166
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein; TC 2.C.1.2.1.
 
 
 
 0.859
Cvib_1167
Cell division and transport-associated protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: plt:Plut_0611 ExbB/TolQ family protein; TC 2.C.1.2.1.
 
   
 0.858
Cvib_1161
TIGRFAM: Tetratricopeptide domain protein; KEGG: plt:Plut_0617 hypothetical protein.
 
  
 0.724
Cvib_0873
PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1053 probable ABC transporter permease protein.
  
 
 
 0.602
pal
PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein; Belongs to the Pal lipoprotein family.
 
    
0.590
Cvib_0874
PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1052 hypothetical protein.
  
 
 
 0.549
Cvib_1165
Cell division and transport-associated protein TolA; KEGG: plt:Plut_0613 TonB-like; TC 2.C.1.2.1.
   
 
 0.545
Cvib_0782
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: plt:Plut_1174 peptidoglycan-binding LysM.
 
 
 
 0.477
Cvib_1031
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: gsu:GSU2401 sensory box histidine kinase/response regulator.
 
 
 0.415
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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