STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_1237PFAM: LmbE family protein; KEGG: plt:Plut_1419 hypothetical protein. (250 aa)    
Predicted Functional Partners:
bshC
KEGG: plt:Plut_0360 hypothetical protein; Belongs to the BshC family.
 
   
 0.815
Cvib_1238
PFAM: extracellular solute-binding protein, family 5; KEGG: plt:Plut_1420 peptide ABC transporter, periplasmic peptide-binding protein, putative.
       0.782
Cvib_0594
PFAM: glycosyl transferase, group 1; KEGG: plt:Plut_0552 glycosyl transferase.
 
  
 0.775
Cvib_0902
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1011 methyltransferase, putative.
 
   
 0.563
Cvib_1239
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_1421 2-vinyl bacteriochlorophyllide hydratase.
       0.559
Cvib_1240
TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1422 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide.
       0.559
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.557
Cvib_1241
KEGG: plt:Plut_1423 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the NifH/BchL/ChlL family.
       0.545
Cvib_0414
KEGG: plt:Plut_0355 hypothetical protein.
 
     0.473
Cvib_0801
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: plt:Plut_1151 polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
 0.462
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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