STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_1502PFAM: hydroxyneurosporene synthase; KEGG: plt:Plut_1720 hydroxyneurosporene synthase CrtC. (375 aa)    
Predicted Functional Partners:
Cvib_0486
PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: plt:Plut_0435 gamma-carotene desaturase.
  
  
 0.942
Cvib_1484
KEGG: plt:Plut_1700 hypothetical protein.
  
 
 0.938
Cvib_1153
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: plt:Plut_0626 carotenoid isomerase, putative.
  
 
 0.928
Cvib_1233
Zeta-carotene desaturase; PFAM: amine oxidase; KEGG: plt:Plut_1415 carotene 7,8-desaturase.
  
  
 0.918
Cvib_0308
PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_0242 glycosyl transferase.
     
 0.905
Cvib_0555
KEGG: plt:Plut_0499 hypothetical protein.
  
     0.771
Cvib_1566
KEGG: plt:Plut_1902 hypothetical protein.
  
     0.769
Cvib_1618
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: plt:Plut_1975 photosystem P840 reaction center iron-sulfur protein.
  
    0.767
Cvib_1151
PFAM: ferredoxin; KEGG: plt:Plut_0628 chlorosome envelope protein J.
  
     0.759
Cvib_0714
KEGG: plt:Plut_1339 hypothetical protein.
  
     0.757
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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