STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_1548PFAM: glycosyl transferase, family 9; KEGG: cte:CT0221 heptosyltransferase. (351 aa)    
Predicted Functional Partners:
Cvib_1618
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: plt:Plut_1975 photosystem P840 reaction center iron-sulfur protein.
  
   0.703
Cvib_1151
PFAM: ferredoxin; KEGG: plt:Plut_0628 chlorosome envelope protein J.
  
   0.695
Cvib_1566
KEGG: plt:Plut_1902 hypothetical protein.
  
     0.683
Cvib_0555
KEGG: plt:Plut_0499 hypothetical protein.
  
     0.638
Cvib_1502
PFAM: hydroxyneurosporene synthase; KEGG: plt:Plut_1720 hydroxyneurosporene synthase CrtC.
  
     0.598
Cvib_1751
Polypeptide-transport-associated domain protein, FtsQ-type; Essential cell division protein.
 
     0.594
Cvib_1549
PFAM: outer membrane chaperone Skp (OmpH); KEGG: plt:Plut_1767 outer membrane protein OmpH.
 
     0.584
Cvib_1385
PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein.
  
     0.574
Cvib_1005
KEGG: plt:Plut_1253 hypothetical protein.
  
     0.565
Cvib_0321
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plt:Plut_0256 ferric siderophore receptor, putative, TonB receptor family.
  
     0.564
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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