Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cvib_1664 | Cvib_1666 | Cvib_1664 | Cvib_1666 | PFAM: ferrochelatase; KEGG: plt:Plut_0103 protoheme ferro-lyase (ferrochelatase)-like; Belongs to the ferrochelatase family. | KEGG: cch:Cag_0272 hypothetical protein. | 0.417 |
Cvib_1664 | pfkA | Cvib_1664 | Cvib_1665 | PFAM: ferrochelatase; KEGG: plt:Plut_0103 protoheme ferro-lyase (ferrochelatase)-like; Belongs to the ferrochelatase family. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.446 |
Cvib_1666 | Cvib_1664 | Cvib_1666 | Cvib_1664 | KEGG: cch:Cag_0272 hypothetical protein. | PFAM: ferrochelatase; KEGG: plt:Plut_0103 protoheme ferro-lyase (ferrochelatase)-like; Belongs to the ferrochelatase family. | 0.417 |
Cvib_1666 | Cvib_1667 | Cvib_1666 | Cvib_1667 | KEGG: cch:Cag_0272 hypothetical protein. | PFAM: band 7 protein; KEGG: syn:slr1768 hypothetical protein. | 0.480 |
Cvib_1666 | pfkA | Cvib_1666 | Cvib_1665 | KEGG: cch:Cag_0272 hypothetical protein. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.714 |
Cvib_1667 | Cvib_1666 | Cvib_1667 | Cvib_1666 | PFAM: band 7 protein; KEGG: syn:slr1768 hypothetical protein. | KEGG: cch:Cag_0272 hypothetical protein. | 0.480 |
Cvib_1667 | pfkA | Cvib_1667 | Cvib_1665 | PFAM: band 7 protein; KEGG: syn:slr1768 hypothetical protein. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.479 |
pfkA | Cvib_1664 | Cvib_1665 | Cvib_1664 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | PFAM: ferrochelatase; KEGG: plt:Plut_0103 protoheme ferro-lyase (ferrochelatase)-like; Belongs to the ferrochelatase family. | 0.446 |
pfkA | Cvib_1666 | Cvib_1665 | Cvib_1666 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | KEGG: cch:Cag_0272 hypothetical protein. | 0.714 |
pfkA | Cvib_1667 | Cvib_1665 | Cvib_1667 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | PFAM: band 7 protein; KEGG: syn:slr1768 hypothetical protein. | 0.479 |