STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cvib_1731TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plt:Plut_2091 beta-phosphoglucomutase hydrolase. (231 aa)    
Predicted Functional Partners:
Cvib_1015
Kojibiose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: plt:Plut_1264 glycosyl hydrolase, family 65.
 
 
 0.873
argS
KEGG: plt:Plut_2092 arginyl-tRNA synthetase, class Ic; TIGRFAM: arginyl-tRNA synthetase.
       0.787
Cvib_1730
KEGG: plt:Plut_2090 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib.
       0.781
Cvib_1022
KEGG: plt:Plut_1271 hypothetical protein.
  
    0.609
Cvib_0485
Domain of unknown function DUF1730; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: plt:Plut_0434 iron-sulfur cluster-binding protein.
      0.583
Cvib_1652
KEGG: plt:Plut_2010 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.469
Cvib_1047
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: plt:Plut_1312 beta-phosphoglucomutase hydrolase.
 
  
0.424
Cvib_1672
Trehalose synthase; KEGG: plt:Plut_2029 alpha amylase, catalytic subdomain; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
  
 0.400
Your Current Organism:
Chlorobium phaeovibrioides
NCBI taxonomy Id: 290318
Other names: C. phaeovibrioides DSM 265, Chlorobium phaeovibrioides DSM 265, Chlorobium vibrioforme f. thiosulfatophilum DSM 265, Prosthecochloris vibrioformis DSM 265
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