STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00003Hypothetical protein; KEGG: eca:ECA4418 4.8e-61 dgoK; 2-dehydro-3-deoxygalactonokinase K00883; COG: COG3734 2-keto-3-deoxy-galactonokinase; Psort location: Cytoplasmic, score:8.96. (300 aa)    
Predicted Functional Partners:
CKO_00004
Hypothetical protein; KEGG: rso:RSc2752 1.9e-57 dgoAa, RS00102; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01631; COG: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.996
CKO_01575
Hypothetical protein; KEGG: eci:UTI89_C1768 8.7e-220 rspA; starvation sensing protein RspA K08323; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Psort location: Cytoplasmic, score:8.96.
 
 0.819
CKO_00001
Hypothetical protein; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.632
CKO_00095
Hypothetical protein; KEGG: reh:H16_A3019 0.0056 hutC; histidine utilization repressor; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
 0.516
CKO_00038
Hypothetical protein; KEGG: eci:UTI89_C4240 9.5e-191 yidR; hypothetical protein YidR; COG: NOG06296 non supervised orthologous group.
      0.418
CKO_02602
Hypothetical protein; KEGG: hma:rrnAC0265 2.6e-07 apl; AP-endonuclease/AP-lyase K01151:K01741; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score:8.96.
  
     0.413
CKO_03986
Hypothetical protein; KEGG: bpm:BURPS1710b_1831 2.4e-192 iolC; IolC protein K03338; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score:9.97.
 
     0.401
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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