close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00007Hypothetical protein; KEGG: stm:STM3789 1.8e-253 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675; COG: COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; Psort location: CytoplasmicMembrane, score:10.00. (500 aa)    
Predicted Functional Partners:
CKO_00008
Hypothetical protein; KEGG: ava:Ava_C0116 2.7e-28 two component transcriptional regulator, LuxR family; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 0.997
CKO_00006
Hypothetical protein; COG: COG2271 Sugar phosphate permease; Psort location: CytoplasmicMembrane, score:10.00.
 
 
 0.993
CKO_00631
Hypothetical protein; KEGG: shn:Shewana3_1692 0.0058 Xaa-His dipeptidase K01270; COG: COG2271 Sugar phosphate permease; Psort location: CytoplasmicMembrane, score:10.00.
  
 
 0.914
CKO_02818
Hypothetical protein; COG: COG2271 Sugar phosphate permease; Psort location: CytoplasmicMembrane, score:10.00.
     
  0.900
CKO_00005
Hypothetical protein; COG: COG2271 Sugar phosphate permease; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.801
CKO_00584
Hypothetical protein; KEGG: eci:UTI89_C1417 4.5e-42 narL; NarL transcriptional dual regulator K07684; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.775
CKO_02815
Hypothetical protein; KEGG: bur:Bcep18194_B2520 4.3e-28 two component transcriptional regulator, LuxR family; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
   0.755
CKO_02622
Hypothetical protein; KEGG: fal:FRAAL1304 2.8e-24 putative protein-glutamate methylesterase; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.714
CKO_04367
Hypothetical protein; KEGG: pha:PSHAa1916 8.9e-21 uvrY, sirA; response regulator K07689; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.26.
 
 
 0.698
CKO_01296
Hypothetical protein; KEGG: eci:UTI89_C1417 3.1e-105 narL; NarL transcriptional dual regulator K07684; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.678
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.