STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00057Hypothetical protein; KEGG: eci:UTI89_C4266 8.3e-89 yieF; hypothetical protein; COG: COG0431 Predicted flavoprotein. (188 aa)    
Predicted Functional Partners:
CKO_00056
Hypothetical protein; KEGG: sty:STY4228 0.00075 4'-phosphopantetheinyl transferase K06133; COG: COG2091 Phosphopantetheinyl transferase.
  
  
 0.807
CKO_01954
Hypothetical protein; COG: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; Psort location: OuterMembrane, score:10.00.
 
      0.635
CKO_04381
Hypothetical protein; KEGG: eci:UTI89_C3411 2.1e-147 yghU; hypothetical GST-like protein YghU K00799; COG: COG0625 Glutathione S-transferase.
  
  
 0.572
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.