STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadAHypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (180 aa)    
Predicted Functional Partners:
birA
Hypothetical protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
 
    0.911
hisI
Hypothetical protein; KEGG: ssn:SSO_2097 6.9e-101 hisI; phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase K01496:K01523; COG: COG0139 Phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score:9.97; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.906
CKO_00223
Hypothetical protein; COG: COG0560 Phosphoserine phosphatase.
     
 0.758
CKO_01173
KEGG: ecp:ECP_1750 1.3e-108 hypothetical protease YeaZ K01423; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; Psort location: Extracellular, score:9.71.
 
  
 0.709
truA
Hypothetical protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.674
CKO_01777
Hypothetical protein; KEGG: sdy:SDY_1527 3.9e-137 xthA; exonuclease III K01142; COG: COG0708 Exonuclease III; Psort location: Cytoplasmic, score:9.97.
   
 
 0.673
CKO_01455
Hypothetical protein; KEGG: stm:STM1627 7.5e-198 alcohol dehydrogenase class III K00001:K00121; COG: COG1062 Zn-dependent alcohol dehydrogenases, class III; Psort location: Cytoplasmic, score:9.97; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
    0.662
gpsA
Hypothetical protein; KEGG: ecs:ECs4486 6.9e-172 glycerol-3-phosphate dehydrogenase (NAD+) K00057; COG: COG0240 Glycerol-3-phosphate dehydrogenase; Psort location: Cytoplasmic, score:8.96; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
 
   
 0.662
CKO_02040
Hypothetical protein; KEGG: reh:H16_A0527 5.1e-41 phoH; phosphate starvation-inducible protein PhoH,predicted ATPase; COG: COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; Psort location: Cytoplasmic, score:9.97.
  
     0.595
guaA
Hypothetical protein; Catalyzes the synthesis of GMP from XMP.
 
  
 0.582
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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