STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00247Hypothetical protein; COG: COG2215 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the NiCoT transporter (TC 2.A.52) family. (326 aa)    
Predicted Functional Partners:
CKO_00246
Hypothetical protein; COG: COG3683 ABC-type uncharacterized transport system, periplasmic component.
 
   
 0.952
CKO_00245
Hypothetical protein; KEGG: spz:M5005_Spy_1664 0.0062 PTS system, mannitol (cryptic)-specific IIA component K00890; COG: COG3711 Transcriptional antiterminator; Psort location: Cytoplasmic, score:8.96.
     
 0.556
CKO_03684
Hypothetical protein; COG: COG2771 DNA-binding HTH domain-containing proteins.
  
     0.520
CKO_01483
COG: COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor; Psort location: Cytoplasmic, score:8.96.
  
     0.507
CKO_01485
Hypothetical protein; KEGG: mag:amb3277 9.8e-09 RTX toxins and related Ca2+-binding protein K00754; COG: NOG35976 non supervised orthologous group.
  
     0.504
CKO_03583
Hypothetical protein; KEGG: spk:MGAS9429_Spy1126 9.9e-32 PTS system, mannitol (cryptic)-specific IIA component K00890; COG: COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; Psort location: CytoplasmicMembrane, score:9.82.
 
   
 0.500
CKO_04704
COG: COG3036 Uncharacterized protein conserved in bacteria.
  
     0.462
CKO_02805
Hypothetical protein; KEGG: eci:UTI89_C0334 7.5e-56 hypothetical protein; COG: COG3468 Type V secretory pathway, adhesin AidA.
  
     0.425
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.