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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00546Hypothetical protein; COG: COG2031 Short chain fatty acids transporter; Psort location: CytoplasmicMembrane, score:10.00. (440 aa)    
Predicted Functional Partners:
CKO_00547
Hypothetical protein; KEGG: eci:UTI89_C2504 1.0e-106 atoA; acetate CoA-transferase beta subunit K01035; COG: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; Psort location: Cytoplasmic, score:8.96.
 
  
 0.942
CKO_00548
Hypothetical protein; KEGG: eco:b2221 1.1e-102 atoD; acetyl-CoA:acetoacetyl-CoA transferase alpha subunit K01034; COG: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.941
CKO_00545
Hypothetical protein; KEGG: eci:UTI89_C2506 4.2e-181 atoB; acetyl-CoA acetyltransferase K00626; COG: COG0183 Acetyl-CoA acetyltransferase; Psort location: Cytoplasmic, score:9.97; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.752
CKO_00550
Hypothetical protein; KEGG: eco:b2219 2.3e-251 atoS; sensor protein AtoS for response regulator AtoC K07710; COG: COG2202 FOG: PAS/PAC domain; Psort location: CytoplasmicMembrane, score:9.82.
 
     0.689
CKO_00549
Hypothetical protein; KEGG: eci:UTI89_C2502 3.6e-207 atoC; acetoacetate metabolism regulatory protein AtoC K07714; COG: COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Psort location: Cytoplasmic, score:9.97.
 
     0.547
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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