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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00626COG: COG2855 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the UPF0324 family. (349 aa)    
Predicted Functional Partners:
CKO_00627
Hypothetical protein; KEGG: shn:Shewana3_3435 1.3e-07 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.732
nfo
Hypothetical protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.
       0.564
CKO_00628
Hypothetical protein.
       0.537
CKO_00622
Hypothetical protein.
       0.509
CKO_00623
Hypothetical protein.
       0.509
CKO_00624
Hypothetical protein; KEGG: eci:UTI89_C2435 5.2e-167 yeiI; hypothetical sugar kinase YeiI K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score:9.97.
       0.509
CKO_00458
Hypothetical protein; COG: COG0730 Predicted permeases; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.423
CKO_00629
Hypothetical protein; KEGG: eci:UTI89_C0120 8.8e-69 aroP; aromatic amino acid transport protein AroP K03293; COG: COG0833 Amino acid transporters; Psort location: CytoplasmicMembrane, score:10.00.
       0.413
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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