STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00668Hypothetical protein; KEGG: ecj:JW5353 3.6e-278 yehU; predicted sensory kinase in two-component system with YehT K07704; COG: COG3275 Putative regulator of cell autolysis; Psort location: CytoplasmicMembrane, score:10.00. (561 aa)    
Predicted Functional Partners:
CKO_00669
Hypothetical protein; KEGG: rru:Rru_A0376 2.7e-74 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score:9.97.
 
 
 0.987
CKO_00419
Hypothetical protein; KEGG: rru:Rru_A0376 1.2e-18 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score:9.97.
 
 
 0.903
CKO_00670
COG: COG4807 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
 
   
 0.729
CKO_00667
Hypothetical protein; KEGG: eci:UTI89_C3737 1.1e-06 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
     
 0.487
CKO_03553
Hypothetical protein; COG: COG2731 Beta-galactosidase, beta subunit; Psort location: Cytoplasmic, score:8.96.
  
     0.423
CKO_03362
Hypothetical protein; KEGG: btl:BALH_0517 1.4e-20 response regulator; COG: COG4565 Response regulator of citrate/malate metabolism; Psort location: Cytoplasmic, score:8.96.
  
     0.401
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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