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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00826Hypothetical protein; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (359 aa)    
Predicted Functional Partners:
CKO_03731
Hypothetical protein; KEGG: mxa:MXAN_1671 0.0048 V-type H(+)-translocating pyrophosphatase K01507; COG: COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.875
CKO_03566
Hypothetical protein; COG: COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; Psort location: CytoplasmicMembrane, score:9.46.
 
  
 0.733
CKO_00825
Hypothetical protein; COG: NOG14366 non supervised orthologous group.
       0.703
CKO_03565
Hypothetical protein; COG: COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.699
CKO_04899
Hypothetical protein; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
  
     0.501
CKO_00824
Hypothetical protein; KEGG: shn:Shewana3_3435 7.1e-28 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
       0.490
CKO_03732
Hypothetical protein; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
  
     0.453
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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