STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00856Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score:8.96. (88 aa)    
Predicted Functional Partners:
CKO_00855
Hypothetical protein; KEGG: nwi:Nwi_0782 8.6e-09 integrase, catalytic region K00986; COG: COG2801 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score:8.96.
 
     0.822
CKO_00857
Hypothetical protein; KEGG: syn:slr0495 6.5e-18 lipopeptide antibiotics iturin a biosynthesis protein K01005; COG: COG2091 Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
       0.480
CKO_00858
Hypothetical protein; KEGG: ava:Ava_B0209 3.1e-06 two component transcriptional regulator, LuxR family K02479; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
       0.480
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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