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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_00880Hypothetical protein; COG: NOG23110 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46. (584 aa)    
Predicted Functional Partners:
CKO_00879
Hypothetical protein; COG: NOG22282 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.798
CKO_02751
Hypothetical protein; COG: NOG13275 non supervised orthologous group.
   
 
 0.745
CKO_04793
Hypothetical protein; KEGG: eci:UTI89_C1627 0. entS; EntS/YbdA MFS transporter; COG: COG5295 Autotransporter adhesin.
   
 
 0.745
CKO_01312
Hypothetical protein; KEGG: eci:UTI89_C1430 3.3e-140 ychK; hypothetical protein; COG: COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
    
   0.628
CKO_00889
Hypothetical protein; COG: COG2948 Type IV secretory pathway, VirB10 components.
   
 
 0.573
CKO_00881
Hypothetical protein.
       0.565
CKO_02972
Hypothetical protein; KEGG: sty:STY0281 3.2e-229 mltD; membrane-bound lytic murein transglycosylase d precursor K08307; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
     
 0.460
topA
Hypothetical protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...]
     
 0.439
CKO_00890
Hypothetical protein; COG: COG3504 Type IV secretory pathway, VirB9 components.
     
 0.401
CKO_00891
Hypothetical protein; COG: COG3736 Type IV secretory pathway, component VirB8.
     
 0.401
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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