STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01140Hypothetical protein; COG: COG2995 Uncharacterized paraquat-inducible protein A; Psort location: CytoplasmicMembrane, score:10.00. (392 aa)    
Predicted Functional Partners:
CKO_01139
COG: COG3008 Paraquat-inducible protein B.
  
 0.977
CKO_02117
COG: COG3008 Paraquat-inducible protein B.
 
  
 0.836
rsmF
Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
      0.697
CKO_02116
COG: COG3009 Uncharacterized protein conserved in bacteria.
 
  
 0.604
lipB
Hypothetical protein; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.560
CKO_01141
Hypothetical protein; COG: COG1956 GAF domain-containing protein; Psort location: Cytoplasmic, score:8.96.
       0.526
CKO_01143
Hypothetical protein; KEGG: stm:STM1845 0. prc; carboxy-terminal protease for penicillin-binding protein 3 K03797; COG: COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
 
     0.463
CKO_01137
Hypothetical protein; COG: NOG13883 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
  
 0.456
proQ
Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family.
       0.412
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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