STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01164Hypothetical protein; KEGG: eci:UTI89_C1702 5.1e-33 hypothetical protein; COG: COG2200 FOG: EAL domain; Psort location: CytoplasmicMembrane, score:9.27. (532 aa)    
Predicted Functional Partners:
CKO_01413
Hypothetical protein; KEGG: eci:UTI89_C1612 1.9e-167 ydaM; hypothetical protein YdaM; COG: COG2199 FOG: GGDEF domain; Psort location: Cytoplasmic, score:8.96.
 
 0.870
CKO_02786
Hypothetical protein; KEGG: eci:UTI89_C0404 5.7e-168 yaiC; hypothetical protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.853
CKO_03924
KEGG: vfi:VFA0057 5.8e-17 sensor protein; COG: COG2199 FOG: GGDEF domain.
 
    0.850
CKO_00712
Hypothetical protein; KEGG: eci:UTI89_C2343 0. yegE; putative sensor-type protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
 
 0.830
CKO_03428
Hypothetical protein; KEGG: ava:Ava_3170 3.1e-25 putative diguanylate cyclase (GGDEF domain) K02488; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
    0.829
CKO_01497
Hypothetical protein; KEGG: aha:AHA_1274 1.8e-29 response regulator PleD (stalked cell differentiation-controllingprotein) K05345; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
    0.818
CKO_00988
Hypothetical protein; KEGG: bpm:BURPS1710b_A1493 5.1e-24 GGDEF domain protein; COG: COG2199 FOG: GGDEF domain.
 
  
 0.806
CKO_00438
Hypothetical protein; KEGG: syn:sll1687 1.4e-24 hik17; hypothetical protein; COG: COG2199 FOG: GGDEF domain; Psort location: Cytoplasmic, score:8.96.
 
    0.797
CKO_01565
Hypothetical protein; KEGG: bpm:BURPS1710b_A1493 1.8e-20 GGDEF domain protein; COG: COG2199 FOG: GGDEF domain; Psort location: Cytoplasmic, score:8.96.
 
    0.797
CKO_01809
Hypothetical protein; KEGG: eci:UTI89_C1612 3.4e-12 ydaM; hypothetical protein YdaM; COG: COG2199 FOG: GGDEF domain.
  
  
 0.787
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.