STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01197Hypothetical protein; KEGG: ecc:c1641 1.0e-131 ldcA; muramoyltetrapeptide carboxypeptidase K01297; COG: COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF. (304 aa)    
Predicted Functional Partners:
CKO_04583
Hypothetical protein; KEGG: ssn:SSO_3330 9.8e-244 dacB; D-alanyl-D-alanine carboxypeptidase fraction B K07259; COG: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
  
 0.748
mpl
Hypothetical protein; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
 
  
 0.712
CKO_01401
Hypothetical protein; COG: COG2866 Predicted carboxypeptidase.
    
 0.662
emtA
Hypothetical protein; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. Preferentially cleaves at a distance of more than two disaccharide units from the ends of the glycan chain.
     
 0.551
CKO_00774
Hypothetical protein; KEGG: stm:STM2062 5.8e-191 dacD; DD-carboxypeptidase, penicillin-binding protein 6b K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: CytoplasmicMembrane, score:8.60; Belongs to the peptidase S11 family.
    
 0.545
CKO_02270
Hypothetical protein; KEGG: ecc:c0924 1.3e-207 dacC; penicillin-binding protein 6 precursor K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.545
CKO_02526
Hypothetical protein; KEGG: sec:SC0666 1.8e-212 dacA; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.545
rlpA
Hypothetical protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 
 0.520
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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