Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CKO_01214 | CKO_01217 | Hypothetical protein; COG: NOG26670 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein. | 0.473 |
CKO_01215 | CKO_01216 | Hypothetical protein. | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | 0.668 |
CKO_01215 | CKO_01217 | Hypothetical protein. | Hypothetical protein. | 0.572 |
CKO_01215 | CKO_01218 | Hypothetical protein. | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | 0.534 |
CKO_01216 | CKO_01215 | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | Hypothetical protein. | 0.668 |
CKO_01216 | CKO_01217 | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | Hypothetical protein. | 0.500 |
CKO_01216 | CKO_01218 | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | 0.936 |
CKO_01217 | CKO_01214 | Hypothetical protein. | Hypothetical protein; COG: NOG26670 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96. | 0.473 |
CKO_01217 | CKO_01215 | Hypothetical protein. | Hypothetical protein. | 0.572 |
CKO_01217 | CKO_01216 | Hypothetical protein. | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | 0.500 |
CKO_01217 | CKO_01218 | Hypothetical protein. | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | 0.408 |
CKO_01218 | CKO_01215 | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | Hypothetical protein. | 0.534 |
CKO_01218 | CKO_01216 | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72. | 0.936 |
CKO_01218 | CKO_01217 | COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. | Hypothetical protein. | 0.408 |