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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01221COG: COG3539 P pilus assembly protein, pilin FimA. (172 aa)    
Predicted Functional Partners:
CKO_01220
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
       0.766
CKO_01219
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
  
   0.716
CKO_01222
Hypothetical protein.
       0.697
CKO_01218
COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00.
  
   0.667
CKO_01216
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
       0.475
CKO_01215
Hypothetical protein.
       0.411
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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