STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01388Hypothetical protein; COG: NOG14122 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96. (74 aa)    
Predicted Functional Partners:
CKO_01389
Hypothetical protein; COG: COG1983 Putative stress-responsive transcriptional regulator.
 
 
 0.998
CKO_01387
Hypothetical protein; KEGG: cal:orf19.3100 2.9e-05 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; Psort location: Cytoplasmic, score:8.96.
 
 
 0.995
CKO_01390
Hypothetical protein; COG: NOG14121 non supervised orthologous group.
  
  
 0.975
CKO_04614
Hypothetical protein; KEGG: sec:SC3266 0. arcB; aerobic respiration control sensor protein K07648; COG: COG0784 FOG: CheY-like receiver; Psort location: CytoplasmicMembrane, score:9.97.
  
 
 
 0.901
CKO_04368
Hypothetical protein; KEGG: sbo:SBO_2396 2.5e-190 evgS, evgA; putative sensor for regulator EvgA K07679; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Psort location: CytoplasmicMembrane, score:9.82.
    
 
 0.842
CKO_04139
Hypothetical protein; KEGG: spt:SPA2823 0. barA; sensor protein; COG: COG0784 FOG: CheY-like receiver; Psort location: CytoplasmicMembrane, score:9.99.
    
 
 0.841
CKO_00500
COG: COG3092 Uncharacterized protein conserved in bacteria.
  
     0.707
CKO_01386
Hypothetical protein; KEGG: eci:UTI89_C1573 1.0e-152 pspF; psp operon transcriptional activator K03974; COG: COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; Psort location: Cytoplasmic, score:8.96.
 
   
 0.694
CKO_00587
COG: COG3082 Uncharacterized protein conserved in bacteria; Belongs to the UPF0352 family.
  
     0.678
rcsD
Hypothetical protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
    
 
 0.632
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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