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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01393Hypothetical protein; KEGG: eci:UTI89_C2502 1.4e-52 atoC; acetoacetate metabolism regulatory protein AtoC K07714; COG: COG3283 Transcriptional regulator of aromatic amino acids metabolism; Psort location: Cytoplasmic, score:8.96. (513 aa)    
Predicted Functional Partners:
CKO_04605
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.772
CKO_01392
COG: COG3768 Predicted membrane protein.
   
 0.723
CKO_01391
Hypothetical protein; KEGG: eci:UTI89_C1592 1.3e-243 ycjX; hypothetical protein YcjX; COG: COG3106 Predicted ATPase; Psort location: Cytoplasmic, score:8.96.
  
  
 0.641
gcvP
Hypothetical protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.477
CKO_01388
Hypothetical protein; COG: NOG14122 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.461
CKO_01389
Hypothetical protein; COG: COG1983 Putative stress-responsive transcriptional regulator.
 
     0.458
CKO_01394
Hypothetical protein; KEGG: eci:UTI89_C3355 0.00015 nupG; transport of nucleosides, permease protein K03289; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
       0.440
CKO_01395
Hypothetical protein.
       0.440
CKO_01396
Hypothetical protein; COG: NOG06222 non supervised orthologous group.
       0.440
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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