Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01435Hypothetical protein; COG: NOG06225 non supervised orthologous group. (879 aa)    
Predicted Functional Partners:
CKO_01436
Hypothetical protein; COG: NOG17319 non supervised orthologous group.
 
   
 0.910
CKO_01437
COG: COG3784 Uncharacterized protein conserved in bacteria.
 
   
 0.897
CKO_03610
COG: COG0729 Outer membrane protein; Psort location: OuterMembrane, score:9.93.
  
 
 0.865
CKO_00717
COG: COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
   
 0.820
CKO_05112
Hypothetical protein; COG: NOG06061 non supervised orthologous group.
  
   
 0.789
CKO_03245
Hypothetical protein; COG: NOG09835 non supervised orthologous group.
  
     0.771
rcsD
Hypothetical protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
    0.770
CKO_01950
Hypothetical protein; KEGG: sec:SC1158 5.2e-80 ycfN; putative cytoplasmic protein K07251; COG: COG0510 Predicted choline kinase involved in LPS biosynthesis; Psort location: Cytoplasmic, score:8.96.
 
     0.767
rcsF
Hypothetical protein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.766
CKO_00036
Hypothetical protein; KEGG: aci:ACIAD3598 0.0040 putative glucose dehydrogenase precursor K00120; COG: COG5645 Predicted periplasmic lipoprotein.
  
     0.765
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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