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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01463COG: COG2841 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. (74 aa)    
Predicted Functional Partners:
CKO_04409
KEGG: eci:UTI89_C3435 0. hypothetical protein; COG: COG1032 Fe-S oxidoreductase.
   
    0.814
CKO_01694
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
  
     0.639
CKO_01697
Hypothetical protein; COG: NOG06203 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.592
CKO_01333
COG: COG3047 Outer membrane protein W; Psort location: OuterMembrane, score:10.00.
   
    0.557
CKO_05081
Hypothetical protein; KEGG: ecj:JW3597 8.2e-50 rfaL; O-antigen ligase K02847; COG: COG3307 Lipid A core - O-antigen ligase and related enzymes; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.524
CKO_01464
Hypothetical protein; KEGG: sbo:SBO_1660 1.8e-70 rimL; acetyl transferase K03817; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score:9.97.
       0.482
mdoD
Hypothetical protein; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs).
       0.456
CKO_00550
Hypothetical protein; KEGG: eco:b2219 2.3e-251 atoS; sensor protein AtoS for response regulator AtoC K07710; COG: COG2202 FOG: PAS/PAC domain; Psort location: CytoplasmicMembrane, score:9.82.
  
     0.438
CKO_01695
Hypothetical protein; KEGG: mag:amb2674 1.7e-08 cytochrome b subunit of formate dehydrogenase K00127; COG: COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); Psort location: CytoplasmicMembrane, score:10.00.
  
     0.417
CKO_03116
Hypothetical protein; KEGG: ecs:ECs4820 6.0e-102 formate dehydrogenase-O major subunit K00123; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Periplasmic, score:9.76.
  
  
 0.410
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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