STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01472Hypothetical protein; KEGG: mmo:MMOB3450 0.0020 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators. (178 aa)    
Predicted Functional Partners:
CKO_01471
Hypothetical protein; KEGG: pol:Bpro_0919 0.0021 NADH dehydrogenase (quinone) K05903; COG: COG3135 Uncharacterized protein involved in benzoate metabolism; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.674
CKO_01531
COG: COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.590
CKO_01473
Hypothetical protein; KEGG: eco:b1435 0. ydcP; putative protease K08303; COG: COG0826 Collagenase and related proteases; Psort location: Cytoplasmic, score:8.96.
       0.562
CKO_01474
Hypothetical protein.
       0.458
CKO_01475
Hypothetical protein; COG: NOG34613 non supervised orthologous group.
       0.458
CKO_01477
Hypothetical protein; KEGG: eci:UTI89_C1658 5.5e-218 ydcR; hypothetical protein YdcR K00811; COG: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; Psort location: Cytoplasmic, score:9.26.
 
    0.419
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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