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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01596Hypothetical protein; KEGG: shn:Shewana3_1692 3.5e-49 Xaa-His dipeptidase K01270; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00. (417 aa)    
Predicted Functional Partners:
CKO_01595
Hypothetical protein; KEGG: shn:Shewana3_3435 5.3e-23 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.26; Belongs to the LysR transcriptional regulatory family.
 
    0.593
CKO_02532
Hypothetical protein; KEGG: eci:UTI89_C0629 1.2e-112 ybeM; putative amidase K01501; COG: COG0388 Predicted amidohydrolase; Psort location: Cytoplasmic, score:8.96.
 
      0.453
CKO_01179
Hypothetical protein; KEGG: shn:Shewana3_3435 7.6e-07 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
   
    0.416
CKO_03356
Hypothetical protein; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.26; Belongs to the LysR transcriptional regulatory family.
   
    0.416
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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