STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01660COG: COG3313 Predicted Fe-S protein. (79 aa)    
Predicted Functional Partners:
CKO_00539
Hypothetical protein; KEGG: ype:YPO3116 1.4e-08 ddhD, ascD, rfbI; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523; COG: COG0633 Ferredoxin; Psort location: Cytoplasmic, score:8.96.
  
     0.707
CKO_00540
Hypothetical protein; KEGG: stm:STM2278 2.3e-196 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526; COG: COG0208 Ribonucleotide reductase, beta subunit; Psort location: Cytoplasmic, score:8.96.
  
     0.702
CKO_00541
Hypothetical protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
     0.678
CKO_01659
Hypothetical protein; KEGG: ecc:c2039 2.7e-147 ydhF; hypothetical oxidoreductase YdhF; COG: COG4989 Predicted oxidoreductase; Psort location: Cytoplasmic, score:8.96.
       0.626
yihI
Hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.579
CKO_00500
COG: COG3092 Uncharacterized protein conserved in bacteria.
  
     0.551
CKO_01661
Hypothetical protein; KEGG: bpm:BURPS1710b_A2293 1.5e-34 TetR-family regulatory protein K00356; COG: COG1309 Transcriptional regulator.
       0.544
syd
Hypothetical protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.517
CKO_04499
Hypothetical protein; KEGG: mja:MJ1454 0.00013 aroD; 3-dehydroquinate dehydratase K03785; COG: NOG17164 non supervised orthologous group.
  
     0.509
CKO_00104
COG: COG3085 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
  
     0.495
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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